Microbiome data analysis tutorials and workflows
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Metagenome prediction with PICRUSt2 tutorial - Check linked wiki page for latest version
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Resources for: Canadian Bioinformatics Workshop 2018: Analysis of Metagenomic Data - Toronto June 5-7, 2018
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Video lecture on shotgun metagenomics data analysis (YouTube link)
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Shotgun metagenomics tutorial (link to Microbiome Helper)
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Workflows for processing microbial amplicon sequencing data (all external links):
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Workflow dependent largely on QIIME 2 - Recommended pipeline (check Microbiome Helper for latest version)
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Workflow for comparing the outputs of different taxa classifiers - April 2020
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DADA2 custom wrapper script workflow - July 2018
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QIIME 1 custom workflow - October 2016
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